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Team Who Where What
1 J Bartholomé, B Brachi, C Bodénès, ML Desprez-Loustau, E Guichoux, A Kremer, G Le Provost, T Leroy, F Ehrenmann, C Lalanne, C Plomion, F Salin BIOGECO, INRA, Univ. Bordeaux, 33620 Cestas France Coordination of the project

Construction of a composite gene-based linkage map

Genetic diversity and somatic mutation analyses

Manual curation of MLO gene family and candidate genes involved in bud dormancy

GO term enrichments and gene family expansion analysis in trees versus herbaceous species

2 JM Aury, V Barbe, C Belser, A Couloux, C Da Silva, C Dossat, S Faye, K Labadie, A Lemainque, MA Madoui, S Mangenot, J Mercier Commissariat à l’Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, F-92057 Evry, France Sequencing and assembly
3 T Alaeitabar, J Amselem, N Francillonne, I Luyten, F Maumus, C Michotey, H Quesneville URGI, INRA, Université Paris-Saclay, 78026 Versailles, France TE and gene annotation.

Genome browser and OakMine Interface

4 F Murat, J Salse GDEC, INRA, UBP, F-63039 Clermont-Ferrand, France Macro-evolutionary analyses
5 S Duplessis, C Marchal, E Morin, A Kohler, F Martin, A Hecker, N Rouhier IAM, INRA, Université de Lorraine, F-54280 Champenoux, France Manual curation of NB-LRR, thioredoxin, glutaredoxin and glutathione transferase gene families

Gene families

Manual curation of genes involved in ectomycorrhizal interactions

6 I Lesur HelixVenture, F-33700 Mérignac, France Identification of allelic gene pairs and tandem duplicated genes
7 P Faivre-Rampant EPGV, INRA, CEA-IG, CNG Centre National de Génotypage, F-92057 Evry, France BAC analysis
8 JC Leplé AGPF, INRA, F-45075, Orléans, France Manual curation of the laccase gene family
9 N Chantret, A Diévart AGAP, INRA, CIRAD, Supagro, F-34060 Montpellier, France Manual curation of the laccase gene family
10 J Chen, M Lascoux Department of Ecology and Genetics, Evolutionary Biology Centre, Science for Life Laboratory, Uppsala University, 752 36 Uppsala, Sweden Analysis of the efficacy of purifying selection in oak
11 H Bergès CNRGV, INRA, F-32326 Castanet, France Preparation of high molecular weight DNA for sequencing
12 MB Bogeat-Triboulot, D Cohen, I Hummel EEF, INRA, Université de Lorraine, F-54280, Champenoux, France Manual curation of the aquaporin gene family.
13 ML Bouffaud, M Tarkka Department of Soil Ecology, UFZ – Helmholtz Centre for Environmental Research, 06220 Halle/Saale, Germany Manual curation of the SWEET gene family
14 C Gaspin, C Klopp, O Rué Plateforme bioinformatique Toulouse Midi-Pyrénées, INRA, F-32326 Auzeville Castanet-Tolosan, France Annotation of noncoding RNA

OrthoMCL analysis

15 J Grima-Pettenati Université de Toulouse, CNRS, UMR 5546, LRSV, F-32326 Castanet-Tolosan, France. Manual curation of MYB gene family
16 S Herrmann German Centre for Integrative Research (iDiv), Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany Annotation of genes involved in ectomycorrhizal interaction
17 P Hugueney, C Rustenholz, A Velt Université de Strasbourg, INRA, SVQV UMR-A 2232, F-68000 Colmar, France Manual curation of candidate gene for gallotannins production
18 E Lasserre, O Panaud, N Picault Université de Perpignan, UMR 5096. F-66860 Perpignan, France Analysis of TEs and genome dynamics
19 M Soler Laboratori del Suro, University of Girona, E-17071 Girona, Spain Manual curation of MYB gene family
20 A Zanne Department of Biological Sciences, George Washington University. Washington, DC 20052, USA Prospect analysis to identify genes related to the tree habit.
21 P Wincker Genoscope, CEA, CNRS UMR 8030, Université d’Evry, France Coordination of the sequencing activities

 

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